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2020 – today
- 2024
[j39]Christian G. Reich
, Anna Ostropolets, Patrick B. Ryan, Peter R. Rijnbeek, Martijn J. Schuemie, Alexander Davydov, Dmitry Dymshyts, George Hripcsak:
OHDSI Standardized Vocabularies - a large-scale centralized reference ontology for international data harmonization. J. Am. Medical Informatics Assoc. 31(3): 583-590 (2024)- [j38]Jianxiao Yang, Martijn J. Schuemie, Xiang Ji, Marc A. Suchard:
Massive Parallelization of Massive Sample-Size Survival Analysis. J. Comput. Graph. Stat. 33(1): 289-302 (2024) - 2023
- [j37]Erica A. Voss, Clair Blacketer, Sebastiaan van Sandijk, Maxim Moinat, Michael Kallfelz, Michel Van Speybroeck, Daniel Prieto-Alhambra, Martijn J. Schuemie, Peter R. Rijnbeek:
European Health Data & Evidence Network - learnings from building out a standardized international health data network. J. Am. Medical Informatics Assoc. 31(1): 209-219 (2023) - [j36]Qiong Wu, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, George Hripcsak, Charles A. Rohde, Yong Chen:
Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes. J. Biomed. Informatics 145: 104476 (2023) - [c15]Martijn J. Schuemie, Jenna Reps, Adam Black, Frank J. DeFalco, Lee Evans, Egill A. Fridgeirsson, James P. Gilbert, Chris Knoll, Martin Lavallee, Gowtham A. Rao, Peter R. Rijnbeek, Katy Sadowski, Anthony G. Sena, Joel N. Swerdel, Ross D. Williams, Marc A. Suchard:
Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research. MedInfo 2023: 966-970 - 2022
- [j35]Chongliang Luo, Md. Nazmul Islam, Natalie E. Sheils, John Buresh, Martijn J. Schuemie, Jalpa A. Doshi, Rachel M. Werner, David A. Asch, Yong Chen:
dPQL: a lossless distributed algorithm for generalized linear mixed model with application to privacy-preserving hospital profiling. J. Am. Medical Informatics Assoc. 29(8): 1366-1371 (2022) - [j34]Linying Zhang, Yixin Wang, Martijn J. Schuemie, David M. Blei, George Hripcsak:
Adjusting for indirectly measured confounding using large-scale propensity score. J. Biomed. Informatics 134: 104204 (2022) - [j33]Joel N. Swerdel, Martijn J. Schuemie, Gayle Murray, Patrick B. Ryan:
PheValuator 2.0: Methodological improvements for the PheValuator approach to semi-automated phenotype algorithm evaluation. J. Biomed. Informatics 135: 104177 (2022) - [j32]Jenna Marie Reps, Ross D. Williams, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek:
Learning patient-level prediction models across multiple healthcare databases: evaluation of ensembles for increasing model transportability. BMC Medical Informatics Decis. Mak. 22(1): 142 (2022) - 2021
- [j31]Sara Khalid, Cynthia Yang, Clair Blacketer, Talita Duarte-Salles, Sergio Fernández-Bertolín, Chungsoo Kim, Rae Woong Park, Jimyung Park, Martijn J. Schuemie, Anthony G. Sena, Marc A. Suchard, Seng Chan You, Peter R. Rijnbeek, Jenna Marie Reps:
A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data. Comput. Methods Programs Biomed. 211: 106394 (2021) - [j30]Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard:
Erratum to: Large-Scale Evidence Generation and Evaluation across a Network of Databases (LEGEND): Assessing Validity Using Hypertension as a Case Study. J. Am. Medical Informatics Assoc. 28(1): 196 (2021) - [j29]Jenna Marie Reps, Patrick B. Ryan, Peter R. Rijnbeek, Martijn J. Schuemie:
Design matters in patient-level prediction: evaluation of a cohort vs. case-control design when developing predictive models in observational healthcare datasets. J. Big Data 8(1): 108 (2021) - [j28]Jenna Marie Reps, Peter R. Rijnbeek, Alana Cuthbert, Patrick B. Ryan, Nicole Pratt, Martijn J. Schuemie:
An empirical analysis of dealing with patients who are lost to follow-up when developing prognostic models using a cohort design. BMC Medical Informatics Decis. Mak. 21(1): 43 (2021) - 2020
- [j27]Rui Duan, Mary Regina Boland, Zixuan Liu, Yue Liu, Howard H. Chang, Hua Xu, Haitao Chu, Christopher H. Schmid, Christopher B. Forrest, John H. Holmes, Martijn J. Schuemie, Jesse A. Berlin, Jason H. Moore, Yong Chen:
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. J. Am. Medical Informatics Assoc. 27(3): 376-385 (2020) - [j26]Rui Duan, Chongliang Luo, Martijn J. Schuemie, Jiayi Tong, C. Jason Liang, Howard H. Chang, Mary Regina Boland, Jiang Bian, Hua Xu, John H. Holmes, Christopher B. Forrest, Sally C. Morton, Jesse A. Berlin, Jason H. Moore, Kevin B. Mahoney, Yong Chen:
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data. J. Am. Medical Informatics Assoc. 27(7): 1028-1036 (2020) - [j25]Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard:
Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study. J. Am. Medical Informatics Assoc. 27(8): 1268-1277 (2020) - [j24]Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard:
Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND). J. Am. Medical Informatics Assoc. 27(8): 1331-1337 (2020) - [c14]Ruijun Chen, Martijn J. Schuemie, Marc A. Suchard, Anna Ostropolets, Linying Zhang, Patrick B. Ryan, George Hripcsak:
Evaluation of Large-scale Propensity Score Modeling and Covariate Balance on Potential Unmeasured Confounding in Observational Research. AMIA 2020 - [c13]George Hripcsak, David M. Blei, Elias Bareinboim, Martijn J. Schuemie, Linying Zhang:
Causal Inference from Observational Healthcare Data: Implications, Impacts and Innovations. AMIA 2020
2010 – 2019
- 2018
- [j23]Mary Regina Boland, Pradipta Parhi, Li Li, Riccardo Miotto, Robert J. Carroll, Usman Iqbal, Phung-Anh (Alex) Nguyen, Martijn J. Schuemie, Seng Chan You, Donahue Smith, Sean D. Mooney, Patrick B. Ryan, Yu-Chuan (Jack) Li, Rae Woong Park, Joshua C. Denny, Joel T. Dudley, George Hripcsak, Pierre Gentine, Nicholas P. Tatonetti:
Uncovering exposures responsible for birth season - disease effects: a global study. J. Am. Medical Informatics Assoc. 25(3): 275-288 (2018) - [j22]Jenna Marie Reps, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, Peter R. Rijnbeek:
Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data. J. Am. Medical Informatics Assoc. 25(8): 969-975 (2018) - 2017
- [j21]Erica A. Voss, Richard D. Boyce, Patrick B. Ryan, Johan van der Lei, Peter R. Rijnbeek, Martijn J. Schuemie:
Accuracy of an automated knowledge base for identifying drug adverse reactions. J. Biomed. Informatics 66: 72-81 (2017) - [j20]Rave Harpaz, William DuMouchel, Martijn J. Schuemie, Olivier Bodenreider, Carol Friedman, Eric Horvitz, Anna Ripple, Alfred Sorbello, Ryen W. White, Rainer Winnenburg, Nigam H. Shah:
Toward multimodal signal detection of adverse drug reactions. J. Biomed. Informatics 76: 41-49 (2017) - 2016
- [j19]Trevor R. Shaddox, Patrick B. Ryan, Martijn J. Schuemie, David Madigan, Marc A. Suchard:
Hierarchical models for multiple, rare outcomes using massive observational healthcare databases. Stat. Anal. Data Min. 9(4): 260-268 (2016) - 2015
- [j18]Erica A. Voss, Rupa Makadia, Amy Matcho, Qianli Ma, Chris Knoll, Martijn J. Schuemie, Frank J. DeFalco, Ajit Londhe, Vivienne J. Zhu, Patrick B. Ryan:
Feasibility and utility of applications of the common data model to multiple, disparate observational health databases. J. Am. Medical Informatics Assoc. 22(3): 553-564 (2015) - [c12]George Hripcsak, Jon D. Duke, Nigam H. Shah, Christian G. Reich, Vojtech Huser, Martijn J. Schuemie, Marc A. Suchard, Rae Woong Park, Ian Chi Kei Wong, Peter R. Rijnbeek, Johan van der Lei, Nicole Pratt, G. Niklas Norén, Yu-Chuan Li, Paul E. Stang, David Madigan, Patrick B. Ryan:
Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers. MedInfo 2015: 574-578 - 2014
- [j17]Zubair Afzal, Ewoud Pons, Ning Kang, Miriam C. J. M. Sturkenboom, Martijn J. Schuemie, Jan A. Kors:
ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus. BMC Bioinform. 15: 373 (2014) - [c11]Vivienne J. Zhu, Rupa Makadia, Amy Matcho, Martijn J. Schuemie, Patrick B. Ryan:
Transforming NHANES Database to the OMOP Common Data Model. AMIA 2014 - 2013
- [j16]Paul Avillach, Preciosa M. Coloma, Rosa Gini, Martijn J. Schuemie, Fleur Mougin, Jean-Charles Dufour, Giampiero Mazzaglia, Carlo Giaquinto, Carla Fornari, Ron Herings, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Marius Fieschi, Miriam C. J. M. Sturkenboom, Johan van der Lei, Antoine Pariente, Gianluca Trifirò:
Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. J. Am. Medical Informatics Assoc. 20(1): 184-192 (2013) - [j15]Zubair Afzal, Martijn J. Schuemie, Jan C. van Blijderveen, Elif F. Sen, Miriam C. J. M. Sturkenboom, Jan A. Kors:
Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records. BMC Medical Informatics Decis. Mak. 13: 30 (2013) - 2011
- [j14]Rob Jelier, Jelle J. Goeman, Kristina M. Hettne, Martijn J. Schuemie, Johan T. den Dunnen, Peter A. C. 't Hoen:
Literature-aided interpretation of gene expression data with the weighted global test. Briefings Bioinform. 12(5): 518-529 (2011) - [c10]Martijn J. Schuemie, Dolf Trieschnigg, Edgar Meij:
DutchHatTrick: Semantic Query Modeling, ConText, Section Detection, and Match Score Maximization. TREC 2011 - 2010
- [j13]Martijn J. Schuemie, Ning Kang, Maarten L. Hekkelman, Jan A. Kors:
GeneE: Gene and protein query expansion with disambiguation. Bioinform. 26(1): 147-148 (2010) - [j12]Kristina M. Hettne, Erik M. van Mulligen, Martijn J. Schuemie, Bob J. A. Schijvenaars, Jan A. Kors:
Rewriting and suppressing UMLS terms for improved biomedical term identification. J. Biomed. Semant. 1: 5 (2010) - [c9]Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors:
A Concept Annotation System for Clinical Records. SWAT4LS 2010 - [i1]Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors:
A Concept Annotation System for Clinical Records. CoRR abs/1012.1663 (2010)
2000 – 2009
- 2009
- [j11]Emma Steele, Allan Tucker, Peter A. C. 't Hoen, Martijn J. Schuemie:
Literature-based priors for gene regulatory networks. Bioinform. 25(14): 1768-1774 (2009) - [j10]Kristina M. Hettne, Rob H. Stierum, Martijn J. Schuemie, Peter J. M. Hendriksen, Bob J. A. Schijvenaars, Erik M. van Mulligen, Jos Kleinjans, Jan A. Kors:
A dictionary to identify small molecules and drugs in free text. Bioinform. 25(22): 2983-2991 (2009) - [j9]Marco Roos, M. Scott Marshall, Andrew P. Gibson, Martijn J. Schuemie, Edgar Meij, Sophia Katrenko, Willem Robert van Hage, Konstantinos Krommydas, Pieter W. Adriaans:
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology. BMC Bioinform. 10(S-10): 9 (2009) - 2008
- [j8]Martijn J. Schuemie, Jan A. Kors:
Jane: suggesting journals, finding experts. Bioinform. 24(5): 727-728 (2008) - [j7]Rob Jelier, Martijn J. Schuemie, Peter-Jan Roes, Erik M. van Mulligen, Jan A. Kors:
Literature-based concept profiles for gene annotation: The issue of weighting. Int. J. Medical Informatics 77(5): 354-362 (2008) - 2007
- [j6]Merel Krijn, Paul M. G. Emmelkamp, Ragnar Olafsson, Martijn J. Schuemie, Charles van der Mast:
Do Self-Statements Enhance the Effectiveness of Virtual Reality Exposure Therapy? A Comparative Evaluation in Acrophobia. Cyberpsychology Behav. Soc. Netw. 10(3): 362-370 (2007) - [j5]Martijn J. Schuemie, Barend Mons, Marc Weeber, Jan A. Kors:
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. J. Biomed. Informatics 40(3): 316-324 (2007) - [c8]Martijn J. Schuemie, Dolf Trieschnigg, Wessel Kraaij:
Cross Language Information Retrieval for Biomedical Literature. TREC 2007 - 2006
- [c7]Dolf Trieschnigg, Wessel Kraaij, Martijn J. Schuemie:
Concept Based Document Retrieval for Genomics Literature. TREC 2006 - 2005
- [j4]Bob J. A. Schijvenaars, Barend Mons, Marc Weeber, Martijn J. Schuemie, Erik M. van Mulligen, Hester M. Wain, Jan A. Kors:
Thesaurus-based disambiguation of gene symbols. BMC Bioinform. 6: 149 (2005) - [j3]Martijn J. Schuemie, Jan A. Kors, Barend Mons:
Word Sense Disambiguation in the Biomedical Domain: An Overview. J. Comput. Biol. 12(5): 554-565 (2005) - [c6]Bob J. A. Schijvenaars, Martijn J. Schuemie, Erik M. van Mulligen, Marc Weeber, Rob Jelier, Barend Mons, Jan A. Kors, Wessel Kraaij:
TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization. TREC 2005 - 2004
- [j2]Martijn J. Schuemie, Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, C. Christiaan van der Eijk, Rob Jelier, Barend Mons, Jan A. Kors:
Distribution of information in biomedical abstracts and full-text publications. Bioinform. 20(16): 2597-2604 (2004) - [c5]Erik M. van Mulligen, Mario Diwersy, Bob J. A. Schijvenaars, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Martijn J. Schuemie, Jan A. Kors, Barend Mons:
Contextual Annotation of Web Pages for Interactive Browsing. MedInfo 2004: 94-98 - 2003
- [c4]Rob Jelier, Martijn J. Schuemie, C. Christiaan van der Eijk, Marc Weeber, Erik M. van Mulligen, Bob J. A. Schijvenaars, Barend Mons, Jan A. Kors:
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification. TREC 2003: 225-233 - 2002
- [c3]Martijn J. Schuemie:
Effect of an external viewpoint on therapist performance in virtual reality exposure therapy. CHI Extended Abstracts 2002: 834-835 - 2001
- [j1]Martijn J. Schuemie, Peter van der Straaten, Merel Krijn, Charles van der Mast:
Research on Presence in Virtual Reality: A Survey. Cyberpsychology Behav. Soc. Netw. 4(2): 183-201 (2001) - 2000
- [c2]Martijn J. Schuemie:
Design of virtual reality exposure therapy systems: task analysis. CHI Extended Abstracts 2000: 345-346
1990 – 1999
- 1999
- [c1]Jan van den Berg, Martijn J. Schuemie:
Information retrieval systems using an associative conceptual space. ESANN 1999: 351-356
Coauthor Index
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