SCENIC-master.zip （92个子文件） 
SCENIC-master Tutorials_JupyterNotebooks 
SCENIC_tutorial_2-ExploringOutput.ipynb 5.19MB
SCENIC.png 70KB
SCENIC_tutorial_2-ExploringOutput.html 13.47MB SCENIC_tutorial_1-RunningVSN.ipynb 18KB SCENIC_tutorial_1-RunningVSN.html 439KB .gitignore 246B NAMESPACE 1KB vignettes detailedStep_3_scoreCells.Rmd 10KB importing_pySCENIC.Rmd 4KB detailedStep_2_createRegulons.Rmd 20KB cell.csl 4KB FAQ.md 8KB detailedStep_4_aucell_binarize.Rmd 7KB corrected.css 120B detailedStep_0_geneFilter.Rmd 3KB references.bib 3KB SCENIC_Running.Rmd 34KB SCENIC_Setup.Rmd 15KB detailedStep_1_coexNetwork2modules.Rmd 9KB R class_ScenicOptions.R 19KB aux_viewMotifs.R 3KB add_cellAnnotation.R 1KB plotTsne_compareSettings.R 2KB aux_rss.R 5KB aux_regulons.R 6KB aux_geneFiltering.R 4KB aux_exportsForArboreto.R 1KB runSCENIC_4.R 9KB aux_export2loom.R 6KB runCorrelation.R 1014B plotTsne_AUCellHtml.R 2KB dotHeatmap.R 2KB priv_openDev.R 717B runSCENIC_2_createRegulons.R 20KB tsneAUC.R 5KB runSCENIC_2_createRegulons_Original.R 17KB runGenie3.R 6KB aux_importsFromPython.R 5KB runSCENIC_3_scoreCells.R 9KB plotTsne_AUCellApp.R 2KB data_exports.R 108B plotTsne_rgb.R 8KB runSCENIC_1_coexNetwork2modules.R 9KB data defaultDbNames.RData 538B .Rbuildignore 203B LICENSE 6KB man regulonsToGeneLists.Rd 476B runSCENIC_4_aucell_binarize.Rd 990B runGenie3.Rd 2KB getTF.Rd 757B tsneAUC.Rd 1KB dotHeatmap.Rd 1008B exportsForArboreto.Rd 844B getRegulonName.Rd 870B getDbAnnotations.Rd 612B importArboreto.Rd 648B regulon_plotExpression.Rd 1KB geneFiltering.Rd 1KB defaultDbNames.Rd 337B add_cell_annotation.Rd 440B export2loom.Rd 1KB plotTsne_compareSettings.Rd 1KB runSCENIC_3_scoreCells.Rd 860B plotTsne_AUCellApp.Rd 919B plotRSS.Rd 1KB ScenicOptions-class.Rd 5KB selectRegulons.Rd 609B onlyNonDuplicatedExtended.Rd 744B importModulesGmt.Rd 1015B runSCENIC_2_createRegulons.Rd 1KB runCorrelation.Rd 988B viewMotifs.Rd 2KB runSCENIC_1_coexNetwork2modules.Rd 1KB plotTsne_AUCellHtml.Rd 926B calcRSS.Rd 504B getDbTfs.Rd 482B importAUCfromText.Rd 995B plotEmb_rgb.Rd 2KB README.md 3KB inst doc importing_pySCENIC.html 1.05MB detailedStep_1_coexNetwork2modules.html 631KB detailedStep_4_aucell_binarize.html 629KB detailedStep_0_geneFilter.html 730KB SCENIC_Running.html 4.9MB SCENIC_Setup.html 753KB detailedStep_3_scoreCells.html 633KB detailedStep_2_createRegulons.html 645KB examples mouseBrain_toy.loom 131KB SCENIC.loom 149KB CITATION 1KB DESCRIPTION 837B NEWS 1KB
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