Bioconductor Delayedmatrixstats

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delayedarray delayedmatrixstats

updated 6.3 years ago by Peter Hickey ▴ 750 • written 6.3 years ago by maltethodberg ▴ 180

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Comment: DESeq2: thousands of NA for pvalues? by fuqichen1 • 0

Hi, do these genes need to be removed from GSEA analysis?

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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