Bioconductor Methylmix

Showing : methylmix • reset

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MethylMix

3.9 years ago Shloka Negi • 0

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methylation epigenomics slurm mpi methylmix

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by parra.sev ▴ 20

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MethylMix

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by sdjnchen • 0

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cancer methylmix methylation betavalues DMvalues

5.1 years ago luciomora8 • 0

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big data methylmix memory problem

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by perdedorium • 0

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MethylMix

6.6 years ago serbulentu • 0

6 results • Page 1 of 1

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Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k

This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…

Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by franknappi14 • 0

I tried it and it's working properly.

Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k

The vignette covers batch effects as per the authors best practice, please read it and consider following it.

Comment: DESeq2 analysis with transcript counts by kahunroleh • 0

Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/

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Answer: Reducing and aggregating GRanges with gaps using plyranges

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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Popular Question to Malcolm Cook ★ 1.6k